EPI 270: Doctoral Seminar in Epidemiology and Translational Science (Winter 2020)

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    		Home Overall Schedule Courses Programs Rosters
    Effective March 9, 2020:  In deference to the coronavirus outbreak, we will not be holding in-person activities for this course at Mission Hall.  Instead, all activities will be implemented via online mechanisms.  The Course Director will be providing additional information, and the relevant changes will be updated on the respective dates on this CLE page. Doctoral Seminar in Epidemiology and Translational Science EPI 270 Winter 2020  . Course Directors:  David Glidden, PhD Professor, Department of Epidemiology and Biostatistics Jacqueline Torres, PhD Assistant Professor, Department of Epidemiology and Biostatistics

  • Select activity 1st Year Forum

    

    1st Year Forum

    A forum for posting first-year data project elements and other assignments for weeks in which only 1st years are present. 

  • Select activity All Years Forum

    

    All Years Forum

    A forum for posting assignments for weeks in which all years are present in the seminar.

• Select section Monday, January 6, 2020; 1PM - 3PM

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  Monday, January 6, 2020; 1PM - 3PM

  ALL YEARS: 

  Preparation for SER abstract submissions (see further instructions below)

  Location: Mission Hall 2100
  

  
  

  Faculty:  

  Dave Glidden, Professor 

  Jackie Torres, Assistant Professor

  Location: Mission Hall (cube somewhere between kitchen and Maria’s cube)
  jacqueline.torres@.ucsf.edu

  Office hours: Please email for appointments.  

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    Required Readings:
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    Optional Reading:

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  • Select activity Assignment: We will assign a primary and seco...

    Assignment: We will assign a primary and secondary reviewer to your abstract. Please send the abstract to your reviewers 24 hours before class. Please also send abstracts to Jackie so that she can have them uploaded for class. We will project and review together. 

    Remember that SER submissions also now allow for a figure - feel free to include one and to have it reviewed by your peers/in class.

• Select section Monday, January 13, 2020; 3:30 PM - 5:30 PM

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  Monday, January 13, 2020; 3:30 PM - 5:30 PM

  Dr. Zinzi Bailey Guest Lecture

  MH 1400

  
  

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• Select section Monday, January 20, 2020; 3:30 PM - 5:30 PM

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  Monday, January 20, 2020; 3:30 PM - 5:30 PM

  UCSF Holiday - no seminar
  
• Select section Monday, January 27, 2020; 3:30 PM - 5:30 PM

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  Monday, January 27, 2020; 3:30 PM - 5:30 PM

  ALL YEARS SEMINAR

  Faculty:  David Glidden & Jackie Torres
  Location:  Mission Hall 2100

  1 - 2 pm: Junior Faculty Guest Lecture, Paul Wesson

  2 - 3 pm: Works in Progress, Chloe Eng

  
  

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• Select section Monday, February 3, 2020; 1 - 3 PM

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  Monday, February 3, 2020; 1 - 3 PM

  FIRST-YEAR SEMINAR

  Faculty:  David Glidden & Maria Glymour
  Location:  Mission Hall 2100

  1 - 2 pm: DAGs, Ch. 6, Confounding Control, Ch. 7, Inverse Probability Weighting, Chs. 11, Hernán & Robins

  2 - 3 pm: First-Year Data Projects

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  • Select activity Chp 6 and 7 notes Glidden

    

    Chp 6 and 7 notes Glidden File
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    Optional Reading:

• Select section Monday, February 10, 2020; 1 - 3 PM

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  Monday, February 10, 2020; 1 - 3 PM

  ALL YEARS SEMINAR

  Faculty:  David Glidden & Jackie Torres

  Location:  Mission Hall 2100

  1pm-1:15pm: Meet Eva Wong

  1:15pm-2pm:  Data Visualization

  2pm-3pm:  Small group review of F aims

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    Session Slides:

  • Select activity visualizing data

    

    visualizing data File
  • Select activity Required Reading:   Irizarry, Intro to D...

    Required Reading:  

     Irizarry, Intro to Data Science, Chapter 10 (Data Visualization Principals)  <link>

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    Optional Reading:

  • Select activity Resources:Broman: Creating effective tables and fi...

    Resources:

    Broman: Creating effective tables and figures <link>

  • Select activity forestdata

    

    forestdata File
  • Select activity bar graph croi

    

    bar graph croi File
  • Select activity forest

    

    forest File
  • Select activity figure-km

    

    figure-km File
  • Select activity iprex-km

    

    iprex-km File
  • Select activity adherencebysite

    

    adherencebysite File
  • Select activity Assignment:

    Assignment:
    

• Select section Monday, February 17, 2020; 3:30 PM - 5:30 PM

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  Monday, February 17, 2020; 3:30 PM - 5:30 PM

  UCSF Holiday - no seminar
  
• Select section Monday, February 24, 2020; 1 - 3 pm

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  Monday, February 24, 2020; 1 - 3 pm

  FIRST-YEAR SEMINAR

  Faculty:  David Glidden & Jackie Torres
  Location:  Mission Hall 2100

  1 - 1:30: Review simulation code from last week's quiz. 

  1:30 - 2:45: Review IPWs, Ch. 12 from Hernán and Robins on IPW weighting and marginal structural models. Applied examples

  2:45 - 3 pm: Rotation Discussion

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    Assignment: 

  • Select activity IPWs

    

    IPWs File
  • Select activity CH12 H&amp;R Code

    

    CH12 H&R Code File
  • Select activity CH12 DATA H&amp;R

    

    CH12 DATA H&R File
• Select section Monday, March 2, 2020; 12:30PM - 3 PM

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  Monday, March 2, 2020; 12:30PM - 3 PM

  ALL YEARS SEMINAR

  Faculty:  David Glidden, Jackie Torres, Erin Van Blarigan
  Location:  Mission Hall 2100

  
  Note: There will be a faculty speed dating event starting at 12:30pm
  Lunch will be served

  12:30 - 2 pm: Faculty speed dating event

  2 - 3 pm: WIPs, Kristen Azar

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  • Select activity Assignment: Optional narrative description

    Assignment: Optional narrative description

  • Select activity Suggested Reading

    

    Suggested Reading File
• Select section Monday, March 9, 1 - 3 pm via Zoom

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  Monday, March 9, 1 - 3 pm via Zoom

  FIRST-YEAR SEMINAR

  Faculty:  Jackie Torres
  

  Location: Via Zoom: https://ucsf.zoom.us/j/875229208 (updated 3/9/20)

  1 - 2 pm: Data Projects

  2 - 3 pm: Inverse Probability Weights - Best Practices

  Please: 

  -Read Austin & Stuart and (optional) Jackson et al. 

  -Have Hernán & Robins Ch. 12 data and code ready to go

  -Come with assignments: simulated code to demonstrate bias due to conditioning on the descendant of a collider; inverse probability weights for data projects. 

  
  

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    Optional Reading:

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  • Select activity Assignment: Optional narrative description

    Assignment: Optional narrative description

  • Select activity Austin &amp; Stuart 2015

    

    Austin & Stuart 2015 File
  • Select activity Jackson et al 2017

    

    Jackson et al 2017 File
  • Select activity Stata Code IPWs

    

    Stata Code IPWs File
• Select section Monday, March 16, 2020; 1 - 3 PM via Zoom

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  Monday, March 16, 2020; 1 - 3 PM via Zoom

  ALL YEAR SEMINAR

  Faculty:  David Glidden & Jackie Torres
  Location:  By Zoom: https://ucsf.zoom.us/j/135757897 (updated 3/9/20)

  1 - 2 pm: Methods Activity

  2 - 3 pm: WIPs, Kristina Dang

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