EPI 264: Spatial Epidemiology (Fall 2017)

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    Spatial Epidemiology EPI 264 Fall 2017 (1.5 units) . Course Directors: Adam Bennett, PhD, MA Assistant Professor, Department of Epidemiology and Biostatistics Hugh Sturrock, PhD, MSc Assistant Professor, Department of Epidemiology and Biostatistics

• Select section Wednesday, September 20, 2017; 12:30 PM - 3:30 PM

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  Wednesday, September 20, 2017; 12:30 PM - 3:30 PM

  Lecture: Concepts of Spatial Epidemiology
  

  Faculty:  Hugh Sturrock
  
  Location:  Mission Hall 1106

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    Session Slides:

  • Select activity Required Reading:

    Required Reading:

  • Select activity readings

    

    readings Folder

    Not available unless: Your ID number contains 02
  • Select activity Resources:

    Resources:

  • Select activity R-intro-session2

    

    R-intro-session2 File
  • Select activity Concepts of spatial epi

    

    Concepts of spatial epi File
  • Select activity Data visualization and exploration in R

    

    Data visualization and exploration in R File
  • Select activity Spatial Epi intro

    

    Spatial Epi intro File
  • Select activity PlottingSpatialData

    

    PlottingSpatialData File
  • Select activity BF Adm 1

    

    BF Adm 1 Folder
  • Select activity Scotland

    

    Scotland File
  • Select activity Week 1 assignment - map making

    

    Week 1 assignment - map making
• Select section Wednesday, September 27, 2017; 12:30 PM - 3:30 PM

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  Wednesday, September 27, 2017; 12:30 PM - 3:30 PM

  Lecture: Using R for spatial analysis

  Faculty:  Hugh Sturrock
  
  Location:  Mission Hall 1106

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    Session Slides:
    

  • Select activity BF pop

    

    BF pop File
  • Select activity BF land use

    

    BF land use File
  • Select activity Manipulating and relating spatial data

    

    Manipulating and relating spatial data File
  • Select activity ManipulatingSpatialData

    

    ManipulatingSpatialData File
  • Select activity BFA water areas

    

    BFA water areas Folder
  • Select activity Manipulating and relating spatial data cheat sheet

    

    Manipulating and relating spatial data cheat sheet File
  • Select activity Relating spatial data

    

    Relating spatial data Assignment
• Select section Wednesday, October 4, 2017; 12:30 PM - 3:30 PM

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  Wednesday, October 4, 2017; 12:30 PM - 3:30 PM

   Lecture: Spatial variation in risk

  Faculty:  Hugh Sturrock
  
  Location:  Mission Hall 1106

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    Session Slides:
    

  • Select activity cases nairobi

    

    cases nairobi File
  • Select activity tanzania uganda hkprev

    

    tanzania uganda hkprev File
  • Select activity CaseControl

    

    CaseControl File
  • Select activity Kelsall Diggle 1995

    

    Kelsall Diggle 1995 File
  • Select activity SpatialVariationRisk

    

    SpatialVariationRisk File
  • Select activity Spatial variation in risk

    

    Spatial variation in risk File
  • Select activity SpatialVariationRisk CheatSheet

    

    SpatialVariationRisk CheatSheet File
• Select section Wednesday, October 11, 2017; 12:30 PM - 3:30 PM

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  Wednesday, October 11, 2017; 12:30 PM - 3:30 PM

  Lecture: Cluster Analysis
  

  Faculty: Jenny Smith
  
  Location:  Mission Hall 1106

  • Select activity cases nairobi

    

    cases nairobi File
  • Select activity CaseControl

    

    CaseControl File
  • Select activity Scotland shapefile

    

    Scotland shapefile Folder
  • Select activity EPI 264: Cluster Analysis Overview

    

    EPI 264: Cluster Analysis Overview File
  • Select activity SatScan Practical

    

    SatScan Practical File
  • Select activity Reading

    

    Reading Folder
  • Select activity Spatial Clustering slides

    

    Spatial Clustering slides File
  • Select activity Cluster Analysis Code

    

    Cluster Analysis Code File
  • Select activity Cluster Analysis Cheat Sheet

    

    Cluster Analysis Cheat Sheet File
  • Select activity Scotland lip cancer data

    

    Scotland lip cancer data File
  • Select activity SatScan Case Control Data

    

    SatScan Case Control Data Folder
  • Select activity Week 3 Homework: SatScan

    

    Week 3 Homework: SatScan Assignment
• Select section Wednesday, October 18, 2017; 12:30 PM - 3:30 PM

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  Wednesday, October 18, 2017; 12:30 PM - 3:30 PM

  Lecture: Introduction to Remote Sensing
  

  Faculty:  Alemayehu Midekisa
  
  Location:  Mission Hall 1106

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    Session Slides:
    

  • Select activity Remote Sensing Overview2017

    

    Remote Sensing Overview2017 File
  • Select activity Lecture IntroductiontoRemoteSensing 2017

    

    Lecture IntroductiontoRemoteSensing 2017 File
  • Select activity Lab 1 GoogleEarthEngine 2017

    

    Lab 1 GoogleEarthEngine 2017 File
  • Select activity Lab 2 GoogleEarthEngine 2017

    

    Lab 2 GoogleEarthEngine 2017 File
  • Select activity EarthEngine Script

    

    EarthEngine Script File
• Select section Wednesday, October 25th, 2017; 12:30 PM - 3:30 PM

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  Wednesday, October 25th, 2017; 12:30 PM - 3:30 PM

  Lecture: Introduction to spatial regression analysis
  

  Faculty:  Adam Bennett
  
  Location:  Mission Hall 1106

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    Session Slides:

  • Select activity Lecture slides - spatial regression

    

    Lecture slides - spatial regression File
  • Select activity NY and Scot data

    

    NY and Scot data File
  • Select activity R code 10_25_17

    

    R code 10_25_17 File
  • Select activity Scottish Lip Cancer

    

    Scottish Lip Cancer Assignment

    Assignment from week of Oct 25th - Areal data mapping (refer to Spatial regression 1.R)

• Select section Wednesday, November 1, 2017; 12:30 PM - 3:30 PM

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  Wednesday, November 1, 2017; 12:30 PM - 3:30 PM

  Lecture: Spatial Regression Analysis

  Faculty: Adam Bennett

  • Select activity Datasets:

    Datasets:

  • Select activity Slides

    

    Slides File
  • Select activity BF and MZ data

    

    BF and MZ data File
  • Select activity r code

    

    r code File
  • Select activity Binomial models

    

    Binomial models Assignment
• Select section Wednesday, November 15, 2017, 12:30 PM - 3:30 PM

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  Wednesday, November 15, 2017, 12:30 PM - 3:30 PM

  Lecture: Spatial Regression Analysis Continued
  

  Faculty: Adam Bennett

  • Select activity space-time code

    

    space-time code File
  • Select activity space-time data

    

    space-time data File
  • Select activity Ricardo's Nov 8 materials

    

    Ricardo's Nov 8 materials File
• Select section Wednesday, November 22, 2017; No Class

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  Wednesday, November 22, 2017; No Class

  Thanksgiving Holiday
  
• Select section Wednesday, Novemeber 29, 2017; 12:30 PM - 3:30 PM

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  Wednesday, Novemeber 29, 2017; 12:30 PM - 3:30 PM

  Lecture: Office hours
  

  Faculty: 
  
  Location:  Mission Hall 1106

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    Session Slides:

  • Select activity Final Project description

    

    Final Project description File
  • Select activity Final Project datasets

    

    Final Project datasets File
  • Select activity Prevalence data

    

    Prevalence data File
• Select section Tuesday, July 30, 2013; 1:15 PM - 2:45 PM (Times and dates for online sessions may differ)

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  Tuesday, July 30, 2013; 1:15 PM - 2:45 PM (Times and dates for online sessions may differ)

  Example Date format: Tuesday, July 30, 2013; 1:15 PM - 2:45 PM 

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  Lecture narrative description here

  Activity options are: Lecture, Small Group Discussion Section, Computer Lab, Journal Club, and Office Hours. Lectures will always have titles but other activities typically won’t. For online activities, add (Times and dates for online sessions may differ)

  Faculty:  (examples:  Mark Pletcher;   Mark Pletcher and Jeff Martin)
  
  Location:  (e.g., China Basin 6702;  or, for small groups:   Martin CB 6702, Cheng CB 6601, Jones CB 5740, and Smith CB 5601 )