Course: EPI 264: Spatial Epidemiology (Fall 2018)

Section outline

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Spatial Epidemiology EPI 264 Fall 2018 (1.5 units) . Course Directors: Adam Bennett, PhD, MA Assistant Professor, Department of Epidemiology and Biostatistics Hugh Sturrock, PhD, MSc Assistant Professor, Department of Epidemiology and Biostatistics

Select section Wednesday, September 19, 2018; 12:30 PM - 3:30 PM

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Wednesday, September 19, 2018; 12:30 PM - 3:30 PM
Lecture: Concepts of Spatial Epidemiology

Faculty: Hugh Sturrock

Location: Mission Hall 2105
- Select activity Session Slides:
  
  Session Slides:
- Select activity Required Reading:
  
  Required Reading:
- Select activity readings
  
  readings Folder
  
  Not available unless: Your ID number contains 02
- Select activity Resources:
  
  Resources:
- Select activity R-intro-session2
  
  R-intro-session2 File
- Select activity BF Adm 1
  
  BF Adm 1 Folder
- Select activity Scotland
  
  Scotland File
- Select activity Week 1 assignment - map making
  
  Week 1 assignment - map making
- Select activity Spatial Epi Intro
  
  Spatial Epi Intro File
- Select activity Concepts of spatial epi
  
  Concepts of spatial epi File
- Select activity Data visualization and exploration in R
  
  Data visualization and exploration in R File
- Select activity Plotting Spatial Data 2018
  
  Plotting Spatial Data 2018 File
Select section Wednesday, September 26, 2018; 12:30 PM - 3:30 PM

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Wednesday, September 26, 2018; 12:30 PM - 3:30 PM
Lecture: Using R for spatial analysis

Faculty: Hugh Sturrock

Location: Mission Hall 2105
- Select activity Session Slides:
  
  Session Slides:
- Select activity BF pop
  
  BF pop File
- Select activity BF land use
  
  BF land use File
- Select activity BFA water areas
  
  BFA water areas Folder
- Select activity Relating spatial data
  
  Relating spatial data Assignment
- Select activity Manipulating spatial data script
  
  Manipulating spatial data script File
- Select activity Manipulating spatial data cheat sheet
  
  Manipulating spatial data cheat sheet File
- Select activity Manipulating spatial data
  
  Manipulating spatial data File
Select section Wednesday, October 3, 2018; 12:30 PM - 3:30 PM

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Wednesday, October 3, 2018; 12:30 PM - 3:30 PM
Lecture: Spatial variation in risk

Faculty: Hugh Sturrock

Location: Mission Hall 2105
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  Session Slides:
- Select activity cases nairobi
  
  cases nairobi File
- Select activity tanzania uganda hkprev
  
  tanzania uganda hkprev File
- Select activity CaseControl
  
  CaseControl File
- Select activity Kelsall Diggle 1995
  
  Kelsall Diggle 1995 File
- Select activity SpatialVariationRisk
  
  SpatialVariationRisk File
- Select activity Spatial variation in risk
  
  Spatial variation in risk File
- Select activity SpatialVariationRisk CheatSheet
  
  SpatialVariationRisk CheatSheet File
Select section Wednesday, October 10, 2018; 12:30 PM - 3:30 PM

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Wednesday, October 10, 2018; 12:30 PM - 3:30 PM
Lecture: Cluster Analysis

Faculty: Jenny Smith

Location: Mission Hall 2105
- Select activity cases nairobi
  
  cases nairobi File
- Select activity CaseControl
  
  CaseControl File
- Select activity Scotland shapefile
  
  Scotland shapefile Folder
- Select activity EPI 264: Cluster Analysis Overview
  
  EPI 264: Cluster Analysis Overview File
- Select activity SatScan Practical
  
  SatScan Practical File
- Select activity Reading
  
  Reading Folder
- Select activity Spatial Clustering slides
  
  Spatial Clustering slides File
- Select activity Cluster Analysis Code
  
  Cluster Analysis Code File
- Select activity Cluster Analysis Cheat Sheet
  
  Cluster Analysis Cheat Sheet File
- Select activity Scotland lip cancer data
  
  Scotland lip cancer data File
- Select activity SatScan Case Control Data
  
  SatScan Case Control Data Folder
- Select activity Week 3 Homework: SatScan
  
  Week 3 Homework: SatScan Assignment
Select section Wednesday, October 17, 2018; 12:30 PM - 3:30 PM

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Wednesday, October 17, 2018; 12:30 PM - 3:30 PM
Lecture: Introduction to Remote Sensing

Faculty: Alemayehu Midekisa

Location: Mission Hall 2105
- Select activity Session Slides:
  
  Session Slides:
- Select activity Remote Sensing Overview2017
  
  Remote Sensing Overview2017 File
- Select activity Lecture IntroductiontoRemoteSensing 2017
  
  Lecture IntroductiontoRemoteSensing 2017 File
- Select activity Lab 1 GoogleEarthEngine 2017
  
  Lab 1 GoogleEarthEngine 2017 File
- Select activity Lab 2 GoogleEarthEngine 2017
  
  Lab 2 GoogleEarthEngine 2017 File
- Select activity EarthEngine Script
  
  EarthEngine Script File
Select section Wednesday, October 31, 2018; 12:30 PM - 3:30 PM

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Wednesday, October 31, 2018; 12:30 PM - 3:30 PM
Lecture: Spatial Regression Analysis

Faculty: Adam Bennett
- Select activity Datasets:
  
  Datasets:
- Select activity Slides
  
  Slides File
- Select activity BF and MZ data
  
  BF and MZ data File
- Select activity r code
  
  r code File
- Select activity Binomial models
  
  Binomial models Assignment
Select section Wednesday, November 7, 2018, 12:30 PM - 3:30 PM

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Wednesday, November 7, 2018, 12:30 PM - 3:30 PM
Lecture: Spatial Regression Analysis Continued

Faculty: Adam Bennett
- Select activity space-time code
  
  space-time code File
- Select activity space-time data
  
  space-time data File
- Select activity Ricardo's Nov 8 materials
  
  Ricardo's Nov 8 materials File
Select section Wednesday, November 14, 2018; 12:30 PM - 3:30 PM

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Wednesday, November 14, 2018; 12:30 PM - 3:30 PM
Lecture: Office hours

Faculty:

Location: Mission Hall 2105
- Select activity Session Slides:
  
  Session Slides:
- Select activity Final Project description
  
  Final Project description File
- Select activity Final Project datasets
  
  Final Project datasets File
- Select activity Prevalence data
  
  Prevalence data File
Select section Wednesday, November 21, 2018; No Class

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Wednesday, November 21, 2018; No Class
Thanksgiving Holiday
Select section Wednesday, November 28, 2018; 1:00 PM - 4:00 PM

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Wednesday, November 28, 2018; 1:00 PM - 4:00 PM
Lecture: Presentation of Final Project

Faculty:

Location: Mission Hall 2105

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July 2026

Section outline

Lecture: Spatial Regression Analysis

Faculty: Adam Bennett

Lecture: Spatial Regression Analysis Continued

Faculty: Adam Bennett