Section outline

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  • Tuesday, April 2, 2019; 10:30 AM - 12:00 PM

    Lecture: Survival data
    Survival data, hazards functions, hazard ratios, basics of the Cox model.

    Faculty:  Chiung-Yu Huang

    Location:    Mission Hall 1401/1402

  • Thursday, April 4, 2019; 10:30 AM - 12:30 PM

    Computer Lab: Survival analysis data 

    Faculty:  Chiung-Yu Huang

    Location:      Mission Hall 1400

    • Assignment:

    • labS1 File
    • labS1 File
    • lab1notes-2019 File

    • Assignment Answer Key (Access restricted to registered students):

    • labS1discussion File

    • Datasets:

    • larynx M File
    • larynx M olderStata File

  • Tuesday, April 9, 2019; 10:30 AM - 12:00 PM

    Lecture: Survival data
    Cox model with binary, categorical and continuous predictors; confounding, mediation and interaction; adjusted survival curves.

    Faculty:  Chiung-Yu Huang

    Location:     Mission Hall 1400

    • Session Slides:

    • lectureS2-2019 File
    • lectureS2-2019 File

    • Session Audio/Video Recording (Access restricted to registered students):

    • Required Reading:

      Chapters 6.2.5-6.2.13, VGSM

    • Assignment:

    • survhw2 File
    • survhw2 File

    • Assignment Due Date: 4/23/2019  by 10:30 AM/Start of Lecture

    • Assignment #Surv 2

      Upload Assignment #2 here

    • Assignment Answer Key (Access restricted to registered students):

    • Datasets:

    • pbc File

  • Thursday, April 11, 2019; 10:30 AM - 12:30 PM

    Computer Lab: Survival analysis data 

    Faculty: Chiung-Yu Huang

    Location:      Mission Hall 1400

    • Assignment:

    • labS2 File
    • labS2 File
    • Labnotes2 File

    • Assignment Answer Key (Access restricted to registered students):

    • Datasets:

    • pbc File

  • Tuesday, April 16, 2019; 10:30 AM - 12:00 PM

    Lecture: Survival Data
    Extensions and Diagnostics for the Cox Model: time-dependent covariates; stratified Cox model; model checking for the Cox model.

    Faculty:  Chiung-Yu Huang

    Location:     Mission Hall 1400

    • Session Slides:

    • lectureS3-2019 File
    • lectureS3-2019 File

    • Session Audio/Video Recording (Access restricted to registered students):

    • Required Reading:

      Chapters 6.3-6.5, VGSM

    • Optional Reading:

    • Assignment: 4/27/2017  by 10:30 AM/Start of Lecture (Note 2 days post Com1)

    • Assignment Due Date:  (e.g.,  1 pm on April 1 2013” or  “At the beginning of Small Group Section”)

    • Assignment Answer Key (Access restricted to registered students):

    • Datasets:

    • Stata Files:

  • Tuesday, April 16, 2019; 12:00 PM - 1:00 PM

    Homework Session

    Faculty:  Chiung-Yu Huang

    Location:     Mission Hall 1400

    • Assignment: Optional narrative description

    • Datasets:

  • Thursday, April 18, 2019; 10:30 AM - 12:30 PM

    Computer Lab: Survival analysis data 

    Faculty:  Chiung-Yu Huang

    Location:      Mission Hall 1400

    • Required Reading:

    • Optional Reading:

    • Assignment:

    • labS3 File
    • labS3 File

    • Assignment Answer Key (Access restricted to registered students):

    • labS3discussion File

    • Datasets:

    • lab3-actg019 a File
    • lab3-pbc a File

  • Tuesday, April 23, 2019; 10:30 AM - 12:00 PM

    Lecture: Repeated measures data
    Introduction to repeated measures data; correlation structures.

    Faculty:  Chuck McCulloch
     
    Location:     Mission Hall 1400

    • Session Slides:

    • Repeated measures lecture 1 File
    • Repeated measures lecture 1 File

    • Session Audio/Video Recording (Access restricted to registered students):

    • Required Reading:

      Chapter 7.1-7.4, VGSM

    • Assignment:

    • Hwk 4, repeated measures part 1 File
    • Hwk 4, repeated measures part 1 File

    • Assignment Due Date: 5/14/2019  by 10:30 AM/Start of Lecture

    • Assignment 4 Upload

    • Assignment Answer Key (Access restricted to registered students):

    • Datasets:

    • hers subset nodm File
    • GAbabies File
    • oai pain File

  • Thursday, April 25, 2019; 10:30 AM - 12:30 PM

    Computer Lab: Repeated measures data
    Introduction to repeated measures data; correlation structures

    Faculty: Chuck McCulloch

    Location:      Mission Hall 1400

    • Required Reading:

    • Assignment:

    • Repeated measures lab 1 File
    • Repeated measures lab 1 File

    • Assignment Answer Key (Access restricted to registered students):

    • Datasets:

    • oai File
    • GAbabies File
    • Quiz for Lab 1

      Quiz for questions in lab 1.  Due by 5pm on lab day. 

  • Tuesday, April 30, 2019; 10:30 AM - 12:00 PM

    Lecture: Common biostatistical problems
    Misinterpretation of p-values; estimates and confidence intervals; accuracy versus conservatism.

    Faculty:  Chiung-Yu Huang

    Location:     Mission Hall 1400

    • Biostat_problems_lecture-2019 File
    • Biostat_problems_lecture-2019 File

    • Session Slides:

    • Session Audio/Video Recording (Access restricted to registered students):

    • Required Reading:

      See Assignment Files

    • Resources:

    • Assignment:

    • Common problems HW File
    • Common problems HW File
    • Homework paper HbA1c disparities File
    • Homework paper Uganda ART pregnancy File

    • Assignment Due Date:  5/2/2019  by 10:30 AM/Start of Lecture (Note 2 days post Com1)

    • Upload Assignment # 3 here

    • Assignment Answer Key (Access restricted to registered students):

    • CommonBiostatAnswers Discussion File

    • Datasets:

  • Thursday, May 2, 2019; 10:30 AM - 12:00 PM

    Lecture: Common biostatistical problems and Competing Risks Analysis
    Discussion of readings. Competing risks survival analysis

    Faculty:  Chiung-Yu Huang

    Location:     Mission Hall 1400

    • Session Slides:

    • lectureS4-2019 File
    • lectureS4-2019 File

    • Session Audio/Video Recording (Access restricted to registered students):

    • Datasets:

    • mros File

  • Thursday, May 2, 2019 12:00 PM - 1:00 PM

    Homework Session


    Faculty:  Chiung-Yu Huang

    Location:     Mission Hall 1400

  • Tuesday, May 7, 2019; 10:30 AM - 12:00 PM

    Lecture: Repeated measures data
    Fixed and random factors; prediction; Stata’s XTMIXED and XTGEE, model checking.

    Faculty:  Chuck McCulloch

    Location:     Mission Hall 1400

  • Thursday, May 9, 2019; 10:30 AM - 12:30 PM

    Computer Lab: Repeated measures data

    Faculty: Chuck McCulloch

    Location:  Mission Hall 1400

    • Required Reading:

    • Assignment:

    • Repeated measures lab 2 File
    • Repeated measures lab 2 File
    • Quiz for Lab 2

      Quiz and feedback for questions in the lab.  Due by 5pm on lab day. 

    • Assignment Answer Key (Access restricted to registered students):

    • Datasets:

    • oai thru 18 months File
    • mousewght File
    • fecfat File

  • Tuesday, May 14, 2019; 10:30 AM - 12:00 PM

    Lecture: Repeated measures data
    Generalized linear models; non-normal outcomes; robust standard errors; use of nonlinear link functions.

    Faculty:  Chuck McCulloch

    Location:     Mission Hall 1400

    • Session Slides:

    • Repeated measures lecture 3 File
    • Repeated measures lecture 3 File

    • Session Audio/Video Recording (Access restricted to registered students):

    • Required Reading:

    • Assignment: Optional narrative description

    • Datasets:

  • Thursday, May 16, 2019; 10:30 AM - 12:30 PM

    Computer Lab: Repeated measures data 

    Faculty:  Chuck McCulloch

    Location:      Mission Hall 1400

    • Required Reading:

    • Assignment:

    • Repeated measures lab 3 File
    • Repeated measures lab 3 File
    • Quiz for Lab 3

      Quiz and feedback for questions in the lab.  Due by 5pm on lab day. 

    • Assignment Answer Key (Access restricted to registered students):

    • Datasets:

    • backpain File
    • GAbabies File

  • Tuesday, May 21, 2019; 10:30 AM - 12:00 PM - No Class

    Lecture: No Class. Week reserved for finishing mentored data project

  • Thursday, May 23, 2019; 10:30 AM - 12:30 PM - No Class

    Computer Lab: No Class. Week reserved for finishing mentored data project

  • Tuesday, May 28, 2019; 10:00 AM - 1:00 PM

    BIOSTATS III Presentations

    Faculty: Chiung-Yu Huang, TBA

    Location:      Mission Hall 2105, 2106, 2107

  • Thursday, May 30, 2019; 10:30 AM - 1:00 PM

    BIOSTATS III Presentations

    Faculty: Chiung-Yu Huang, TBA

    Location:      Mission Hall 2105, 2106, 2107

  • Tuesday, June 4, 2019; 10:00 AM - 1:00 PM

    BIOSTATS III Presentations

    Faculty:  Chiung-Yu Huang, TBA

    Location:      Mission Hall 2105,2106, 2107

  • Thursday, June 6, 2019; 10:30 AM - 1:00 PM

    BIOSTATS III Presentations

    Faculty: Chiung-Yu Huang, TBA 

    Location:      Mission Hall 2105, 2106, 2107