Section outline

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  • Tuesday, March 30, 2021; 10:30 AM - 12:00 PM

    Lecture: Survival data
    Survival data, hazards functions, hazard ratios, basics of the Cox model.

    Faculty:  Chiung-Yu Huang

    • Session Slides:

    • Readiness Quiz for Survival Lecture 1 (Quiz will not be graded and counted in the final grade)
    • lectureS1-2021 File
      Available until end of June 14, 2021
    • lectureS1-2021 File
      Available until end of June 14, 2021

    • Session Audio/Video Recording (Access restricted to registered students):

    • Watch 2021 Survival Analysis Lecture 1 Media Resource
      Not available unless: You belong to Registered Students Only
    • Pre-recorded Survival Lecture 1 (2021) Media Resource
      Not available unless: You belong to Registered Students Only

    • Required Reading:

      Useful to review Chapter 3.5 in advance

      Chapters 6.1-6.2.4, VGSM

    • biostat 209_overview-2021 File
    • biostat 209_duedates-2021 File
    • ProjectGuidelines File

    • Optional Reading:

    • ArtiShahPresentation2014 File
    • ArtiShahProject2014 File
    • ArtiShahTables2014 File
    • DawnGanoPresentation2014 File
    • DawnGanoProject2014 File
    • KristenAiemjoyPresentation2014 File
    • KristenAiemjoyProject2014 File
    • MeeraSheffrinProject2014 File
    • RalphWangProject2014 File
    • SusanLeePresentation2014 File
    • SusanLeeProject2014 File

    • Assignment:

    • survhw1 File
    • survhw1 File

    • Assignment Due Date: 4/13/2021 by 10:30 AM/Start of Lecture

       

    • Assignment # Surv 1

      Please upload assignment number 1 here.

    • Assignment Answer Key (Access restricted to registered students):

    • Datasets:

    • actg019 File
    • pbc File

  • Thursday, April 1, 2021; 10:30 AM - 12:30 PM

    Computer Lab: Survival analysis data 

    Faculty:  Chiung-Yu Huang

    • Assignment:

    • Survival Lab 1 Quiz (submit your answer by 5 PM on lab day to get points towards the final grade)
    • labS1 File
    • labS1 File
    • lab1notes-2019 File

    • Assignment Answer Key (Access restricted to registered students):

    • labS1discussion File

    • Datasets:

    • larynx M File
    • larynx M olderStata File

  • Tuesday, April 6, 2021; 10:30 AM - 12:00 PM

    Lecture: Survival data
    Cox model with binary, categorical and continuous predictors; confounding, mediation and interaction; adjusted survival curves.

    Faculty:  Chiung-Yu Huang

    • Session Slides:

    • Readiness Quiz for Survival Lecture 2 (Quiz will not be graded and counted in the final grade)
    • lectureS2-20210402 File
    • lectureS2-20210402 File

    • Session Audio/Video Recording (Access restricted to registered students):

    • Watch 2021 Survival Analysis Lecture 2 (Part 1) Media Resource
      Not available unless: You belong to Registered Students Only
    • Watch 2021 Survival Analysis Lecture 2 (Part 2) Media Resource
      Not available unless: You belong to Registered Students Only
    • Survival Lecture 2 pre-recorded lecture Media Resource
      Not available unless: You belong to Registered Students Only

    • Required Reading:

      Chapters 6.2.5-6.2.13, VGSM

    • Assignment:

    • survhw2 File
    • survhw2 File

    • Assignment Due Date: 4/20/2021  by 10:30 AM/Start of Lecture

    • Assignment #Surv 2

      Upload Assignment #2 here

    • Assignment Answer Key (Access restricted to registered students):

    • Datasets:

    • pbc File

  • Thursday, April 8, 2021; 10:30 AM - 12:30 PM

    Computer Lab: Survival analysis data 

    Faculty: Chiung-Yu Huang


    • Assignment:

    • Survival Lab 2 Quiz (submit your answer by 5 PM on lab day to get points towards the final grade)
    • Watch 2021 Survival Lab 2 Media Resource
      Not available unless: You belong to Registered Students Only
    • labS2 File
    • labS2 File
    • Labnotes2_20210408 File

    • Assignment Answer Key (Access restricted to registered students):

    • Datasets:

    • pbc File

  • Tuesday, April 13, 2021; 10:30 AM - 12:00 PM

    Lecture: Survival Data
    Extensions and Diagnostics for the Cox Model: time-dependent covariates; stratified Cox model; model checking for the Cox model.

    Faculty:  Chiung-Yu Huang

    • Session Slides:

    • lectureS3-2021 File
    • lectureS3-2021 File
    • Readiness Quiz for Survival Lecture 3 (Quiz will not be graded and counted in the final grade)

    • Session Audio/Video Recording (Access restricted to registered students):

    • Survival Lecture 3 prerecorded lecture Media Resource
      Not available unless: You belong to Registered Students Only
    • Watch 2021 Survival Analysis Lecture 3 Media Resource
      Not available unless: You belong to Registered Students Only

    • Required Reading:

      Chapters 6.3-6.5, VGSM

    • Optional Reading:

    • Assignment Due Date:  (e.g.,  1 pm on April 1 2013” or  “At the beginning of Small Group Section”)

    • Assignment Answer Key (Access restricted to registered students):

    • Datasets:

    • Stata Files:

  • Thursday, April 15, 2021; 10:30 AM - 12:30 PM

    Computer Lab: Survival analysis data 

    Faculty:  Chiung-Yu Huang

    • Required Reading:

    • Optional Reading:

    • Assignment:

    • Watch 2021 Survival Lab 3 Media Resource
    • labS3 File
    • labS3 File
    • Labnotes3 File
    • Labnotes3 File
    • Survival Lab 3 Quiz (submit your answer by 5 PM on lab day to get points towards the final grade)

    • Assignment Answer Key (Access restricted to registered students):

    • labS3discussion File

    • Datasets:

    • lab3-actg019 a File
    • lab3-pbc a File

  • Tuesday, April 20, 2021; 10:30 AM - 12:00 PM

    Lecture: Common biostatistical problems
    Misinterpretation of p-values; estimates and confidence intervals; accuracy versus conservatism.

    Faculty:  Chiung-Yu Huang

    • Biostat_problems_lecture-2021 File
    • Biostat_problems_lecture-2021 File
    • Readiness Quiz for Common Biostatistical Problems Lecture (Quiz will not be graded and counted in the final grade)

    • Session Slides:

    • Session Audio/Video Recording (Access restricted to registered students):

    • Pre-recorded Common Biostatistical Problems Lecture (2021) Media Resource
      Not available unless: You belong to Registered Students Only
    • Watch 2021 Common Biostat Problems Lecture Media Resource
      Not available unless: You belong to Registered Students Only
    • Watch 2019 recording URL
      Not available unless: You belong to a group in Registered Students Only

    • Required Reading:

      See Assignment Files

    • Resources:

    • Assignment:

    • Common problems HW File
    • Common problems HW File
    • Homework paper HbA1c disparities File
    • Homework paper Uganda ART pregnancy File

    • Assignment Due Date:  4/22/2021  by 10:30 AM/Start of Lecture (Note 2 days post Com1)

    • Upload Assignment # 3 here

    • Assignment Answer Key (Access restricted to registered students):

    • CommonBiostatAnswers Discussion File

    • Datasets:

  • Thursday, April 22, 2021; 10:30 AM - 12:00 PM

    Lecture: Common biostatistical problems and Competing Risks Analysis
    Discussion of readings. Competing risks survival analysis

    Faculty:  Chiung-Yu Huang

    • Session Slides:

    • lectureS4-2021 File
    • lectureS4-2021 File
    • Interactions in Regression File
    • Interactions in Regression File

    • Session Audio/Video Recording (Access restricted to registered students):

    • Pre-recorded Survival Lecture 4 (2021) Media Resource
      Not available unless: You belong to Registered Students Only
    • Watch 2019 Recording URL
      Not available unless: You belong to a group in Registered Students Only

    • Datasets:

    • mros File
    • Readiness Quiz for Survival Lecture 4 (Quiz will not be graded and counted in the final grade)

  • Tuesday, April 27, 2021; 10:30 AM - 12:00 PM

    Lecture: Repeated measures data
    Introduction to repeated measures data; correlation structures.

    Faculty:  Chuck McCulloch

  • Thursday, April 29, 2021; 10:30 AM - 12:30 PM

    Computer Lab: Repeated measures data
    Introduction to repeated measures data; correlation structures

    Faculty: Chuck McCulloch

    • Session Audio/Video Recording (Access restricted to registered students):

    • 2021 Repeated measures lab 1 Media Resource
      Not available unless: You belong to a group in Registered Students Only

    • Required Reading:

    • Assignment:

    • Biostat 209 Repeated Measures Lab 1 File
    • Biostat 209 Repeated Measures Lab 1 File
    • Quiz for Lab 1

      Quiz for questions in lab 1.  Due by 5pm on lab day. 

    • Assignment Answer Key (Access restricted to registered students):

    • Datasets:

    • oai File
    • GAbabies File

  • Tuesday, May 4, 2021; 10:30 AM - 12:00 PM

    Lecture: Repeated measures data
    Fixed and random factors; prediction; Stata’s XTMIXED and XTGEE, model checking.

    Faculty:  Chuck McCulloch

  • Thursday, May 6, 2021; 10:30 AM - 12:30 PM

    Computer Lab: Repeated measures data

    Faculty: Chuck McCulloch

  • Tuesday, May 11, 2021; 10:30 AM - 12:00 PM

    Lecture: Repeated measures data
    Generalized linear models; non-normal outcomes; robust standard errors; use of nonlinear link functions.

    Faculty:  Chuck McCulloch

    • Session Slides:

    • Lecture 3 Readiness Quiz
    • Repeated measures lecture 3 part 1 File
    • Repeated measures lecture 3 part 2 File
    • Repeated measures lecture 3 part 1 File
    • Repeated measures lecture 3 part 2 File

    • Session Audio/Video Recording (Access restricted to registered students):

    • Repeated measures lecture 3 discussion 2021 Media Resource
    • Repeated measures lecture 3 part 1 Media Resource
      Not available unless: You belong to a group in Registered Students Only
    • Repeated measures lecture 3 part 2 Media Resource
      Not available unless: You belong to a group in Registered Students Only

    • Required Reading:

    • Assignment: Optional narrative description

    • Datasets:

  • Thursday, May 13, 2021 10:30 AM - 12:30 PM

    Computer Lab: Repeated measures data 

    Faculty:  Chuck McCulloch

  • Tuesday, May 18, 2021; 10:30 AM - 12:30 PM - No Class

    Lecture: No Class. Week reserved for finishing mentored data project

  • Thursday, May 20, 2021; 10:30 AM - 12:30 PM - No Class

    Computer Lab: No Class. Week reserved for finishing mentored data project

  • Tuesday, May 25, 2021; 10:00 AM - 1:00 PM

    BIOSTATS III Presentations

    Faculty: Chiung-Yu Huang, TBA

    Location:      Online

  • Thursday, May 27, 2021; 10:00 AM - 1:00 PM

    BIOSTATS III Presentations

    Faculty: Chiung-Yu Huang, TBA

    Location:      Online

  • Tuesday, June 1, 2021; 10:00 AM - 1:00 PM

    BIOSTATS III Presentations

    Faculty:  Chiung-Yu Huang, TBA

    Location:      Online

  • Thursday, June 3, 2021; 10:00 AM - 1:00 PM

    BIOSTATS III Presentations

    Faculty: Chiung-Yu Huang, TBA 

    Location:      Online